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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
pCHi-C
2
ChIP-seq
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
2
DNA binding
1
DNA methylation
Target of assay
3
histone
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
2
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
32
bed narrowPeak
6
bam
6
tsv
5
bigBed narrowPeak
5
bigWig
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
55
Homo sapiens
Biosample type
52
tissue
3
primary cell
Organ
788
pancreas
639
liver
597
connective tissue
457
adipose tissue
413
epithelium
266
heart
246
kidney
159
bone element
152
vasculature
150
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
30
musculature of body
25
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
29
hg19
1
GRCh38
Lab
55
AMP-T2D consortium
files.file_type!
bigBed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
55 results
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ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
RRBS
tissue
islet of Langerhans
1
14
4
retina
15
3
pigmented layer of retina
12
2
small intestine
1
primary cell
retinal pigment epithelial cell
2
1
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