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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
10
ChIP-seq
1
GRO-seq
Assay category
14
Transcription
10
DNA binding
Target of assay
12
histone
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
December, 2017
7
February, 2018
2
May, 2021
1
January, 2018
Available data
24
bam
18
bigWig
15
fastq
14
tsv
3
bed narrowPeak
1
bed bed3+
Organism
25
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
cell line
Organ
788
pancreas
638
liver
597
connective tissue
457
adipose tissue
413
epithelium
266
heart
246
kidney
159
bone element
152
vasculature
150
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
37
limb
30
musculature of body
25
embryo
20
lung
17
nerve
16
skeleton
15
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
files.file_type!
bigBed broadPeak
target.investigated_as!
histone modification
other post-translational modification
BIOSAMPLE
ASSAY
25 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
8
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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