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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
19
August, 2017
10
July, 2019
6
June, 2019
5
March, 2020
5
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
50
Homo sapiens
Biosample type
41
tissue
9
primary cell
Organ
866
pancreas
674
liver
642
connective tissue
477
adipose tissue
455
epithelium
298
heart
261
kidney
195
vasculature
193
blood vessel
159
bone element
134
brain
131
artery
71
limb
68
blood
68
bodily fluid
54
eye
50
musculature of body
33
nerve
29
embryo
22
spleen
20
lung
16
skeleton
12
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
29
hg19
15
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
files.file_type!
bigBed broadPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
50 results
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Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
1
muscle of leg
5
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
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