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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
Assay category
20
DNA binding
Target of assay
23
transcription factor
20
histone
20
histone modification
12
chromatin remodeller
11
narrow histone mark
9
broad histone mark
4
RNA binding protein
1
recombinant protein
Date released
10
August, 2017
7
December, 2017
2
February, 2018
1
October, 2018
Available data
31
bam
31
bigWig
31
fastq
29
bed narrowPeak
16
bigBed narrowPeak
11
bed broadPeak
bigBed broadPeak
11
tagAlign
6
bed bed3+
Organism
20
Homo sapiens
Biosample type
7
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
9
pancreas
5
epithelium
2
embryo
1
liver
Project
20
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
20
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
20
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
in vitro differentiated cells
definitive endodermal cell
3
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
primitive gut cell
1
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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