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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
6
Hi-C
4
RRBS
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
10
DNA binding
6
3D chromatin structure
4
DNA methylation
3
Transcription
DNA accessibility
Target of assay
6
histone
6
histone modification
4
broad histone mark
4
control
2
narrow histone mark
Date released
13
August, 2017
4
July, 2019
3
March, 2020
2
February, 2020
1
May, 2019
1
May, 2022
Available data
bigWig
19
bed narrowPeak
15
tagAlign
13
bed broadPeak
12
bam
7
tsv
6
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
24
Homo sapiens
Biosample type
24
tissue
primary cell
Organ
164
liver
134
kidney
123
heart
92
connective tissue
88
bone element
86
pancreas
64
adipose tissue
61
brain
30
blood vessel
30
vasculature
25
eye
25
limb
24
musculature of body
19
epithelium
13
artery
12
nerve
10
lung
9
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
4
hg19
Lab
24
AMP-T2D consortium
files.file_type!
bigWig
assay_slims!
DNA accessibility
biosample_type!
primary cell
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
4
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
muscle of leg
1
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