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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
98
total RNA-seq
36
single cell RNA-seq
8
WGBS
4
RRBS
1
Hi-C
Assay category
135
DNA binding
134
Transcription
DNA accessibility
12
DNA methylation
1
3D chromatin structure
Target of assay
129
control
5
transcription factor
2
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
1
recombinant protein
Date released
76
February, 2023
47
November, 2017
38
September, 2020
30
August, 2017
27
October, 2018
18
February, 2021
13
December, 2017
8
November, 2018
6
May, 2022
6
September, 2017
5
December, 2018
4
January, 2019
3
October, 2017
1
September, 2018
Available data
2730
bam
bigWig
1455
tsv
1215
bed narrowPeak
1116
fastq
787
bigBed narrowPeak
358
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
43
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
5
hdf5
3
cool
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
281
Homo sapiens
Biosample type
147
primary cell
79
tissue
55
cell line
in vitro differentiated cells
1
stem cell
Organ
95
pancreas
71
epithelium
71
liver
20
adipose tissue
20
connective tissue
8
spleen
6
blood
6
bodily fluid
3
brain
2
musculature of body
Project
150
AMP
132
HPAP
Genome assembly (visualization)
8
hg19
4
GRCh38
Lab
144
AMP-T2D consortium
132
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
Audit category:
2
missing controlled_by
files.file_type!
bigWig
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
282 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
RRBS
Hi-C
primary cell
pancreatic alpha cell
6
42
6
exocrine cell
39
Langerhans cell
34
pancreatic beta cell
6
11
pancreatic cell
2
+ See 1 more…
tissue
liver
17
1
1
islet of Langerhans
7
6
subcutaneous adipose tissue
10
body of pancreas
8
omental fat pad
8
+ See 6 more…
cell line
HepG2
48
1
GM12878
6
stem cell
hESC
1
See all biosamples
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