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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
63
DNA binding
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
29
control
22
histone
22
histone modification
12
transcription factor
11
broad histone mark
11
narrow histone mark
5
RNA binding protein
Date released
43
May, 2021
August, 2017
10
August, 2021
9
December, 2017
8
February, 2018
6
March, 2020
4
February, 2023
2
December, 2019
2
October, 2019
1
August, 2018
Available data
220
bam
bigWig
131
tsv
87
fastq
68
bed narrowPeak
26
tagAlign
14
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
85
Homo sapiens
Biosample type
654
tissue
282
primary cell
114
cell line
85
in vitro differentiated cells
7
stem cell
Organ
8
embryo
7
connective tissue
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
85
AMP
Genome assembly (visualization)
12
hg19
4
GRCh38
Lab
42
Kyle Gaulton, UCSD
41
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
assay_slims!
DNA accessibility
month_released!
August, 2017
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
neural progenitor cell
8
cardiomyocytes (cardiac muscle cell)
2
2
2
pancreatic endoderm
6
Hepatic endoderm
2
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