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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
18
single cell RNA-seq
6
WGBS
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
192
August, 2021
138
August, 2017
116
February, 2021
101
May, 2022
100
February, 2023
88
October, 2019
72
November, 2017
67
May, 2021
56
September, 2020
47
September, 2023
44
March, 2020
29
October, 2018
26
May, 2020
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
15
April, 2019
10
November, 2020
9
April, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
May, 2023
4
November, 2019
4
October, 2022
1
August, 2018
1
March, 2019
1
September, 2018
Available data
559
tsv
554
bam
bigWig
89
txt
18
fastq
8
tagAlign
6
csv
5
bed narrowPeak
2
bed bed3+
Organism
116
Homo sapiens
Biosample type
93
tissue
19
primary cell
4
cell line
Organ
84
bone element
8
kidney
6
epithelium
6
pancreas
2
artery
2
blood vessel
2
heart
2
liver
2
vasculature
1
connective tissue
Project
98
AMP
18
HPAP
Genome assembly (visualization)
2
hg19
Lab
98
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
5
audit script error
files.file_type!
bigWig
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
116 results
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RNA microarray
single cell RNA-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
2
HepG2
1
iPSC derived cell line
1
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