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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
1
Hi-C
1
total RNA-seq
Assay category
DNA accessibility
12
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
9
control
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
5
December, 2017
2
August, 2017
2
October, 2019
2
September, 2017
1
March, 2023
1
May, 2023
1
November, 2017
Available data
bigWig
2641
bam
1400
tsv
1217
bed narrowPeak
898
fastq
767
bigBed narrowPeak
246
tagAlign
76
bed broadPeak
62
bigBed broadPeak
54
bed bed3+
17
bed bedMethyl
17
bigBed bedMethyl
1
hdf5
1
hic
1
tagAlign bed3+
Organism
14
Homo sapiens
Biosample type
7
tissue
5
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
3
brain
2
connective tissue
2
pancreas
1
adipose tissue
1
embryo
1
liver
Project
13
AMP
1
ITG
Genome assembly (visualization)
59
hg19
14
GRCh38
Lab
13
AMP-T2D consortium
1
ITG
files.file_type!
bigWig
assay_slims!
DNA accessibility
organ_slims!
skeleton
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
Hi-C
total RNA-seq
tissue
islet of Langerhans
2
adipose tissue
1
cingulate gyrus
1
dorsal plus ventral thalamus
1
liver
1
+ See 1 more…
in vitro differentiated cells
Posterior foregut
1
adipocyte
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
primary cell
chondrocytes
1
stem cell
hESC
1
See all biosamples
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