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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
5
pCHi-C
3
ChIP-seq
1
RRBS
Assay category
DNA accessibility
19
Transcription
3
DNA binding
1
DNA methylation
Target of assay
2
histone
2
histone modification
2
narrow histone mark
1
control
Date released
20
October, 2019
4
February, 2023
1
February, 2020
1
July, 2019
1
June, 2019
1
March, 2020
Available data
6
tsv
3
bam
2
bed narrowPeak
2
bigBed narrowPeak
bigWig
1
bed bedMethyl
1
bigBed bedMethyl
Organism
28
Homo sapiens
Biosample type
26
tissue
2
primary cell
Organ
201
pancreas
166
liver
152
epithelium
140
kidney
126
heart
98
connective tissue
89
bone element
64
adipose tissue
62
brain
38
vasculature
37
blood vessel
27
eye
27
musculature of body
25
limb
13
artery
12
nerve
10
lung
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
1
hg19
Lab
28
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
28 results
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total RNA-seq
pCHi-C
ChIP-seq
RRBS
tissue
islet of Langerhans
14
4
2
retina
3
pigmented layer of retina
2
bladder (urinary bladder)
1
primary cell
retinal pigment epithelial cell
1
1
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