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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
WGBS
3
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
DNA binding
4
DNA methylation
3
Transcription
2
DNA accessibility
Date released
4
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
bigWig
405
bam
401
tsv
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
11
Homo sapiens
Biosample type
11
tissue
1
in vitro differentiated cells
Organ
266
pancreas
210
kidney
195
epithelium
149
heart
101
bone element
58
vasculature
57
blood vessel
52
eye
49
liver
47
artery
36
connective tissue
20
lung
18
brain
16
musculature of body
16
skeleton
13
limb
12
adipose tissue
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
12
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
12 results
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Clear Filters
WGBS
total RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
1
1
1
1
subcutaneous abdominal adipose tissue
3
subcutaneous adipose tissue
1
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
in vitro differentiated cells
white fat cell
1
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