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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
9
Transcription
3
3D chromatin structure
1
DNA methylation
Date released
35
February, 2023
8
February, 2021
6
August, 2021
3
February, 2020
3
March, 2020
1
July, 2019
1
October, 2019
Available data
81
bam
bigWig
68
tsv
56
bed narrowPeak
11
bed bed3+
10
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
57
Homo sapiens
Biosample type
47
tissue
8
cell line
2
primary cell
Organ
266
pancreas
210
kidney
195
epithelium
149
heart
101
bone element
58
vasculature
57
blood vessel
52
eye
49
liver
47
artery
36
connective tissue
20
lung
18
brain
16
musculature of body
16
skeleton
13
limb
12
adipose tissue
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
57
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
cell line
smooth muscle cell of the coronary artery
8
primary cell
endothelial cell of umbilical vein
2
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