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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
6
Hi-C
5
RRBS
3
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
23
DNA binding
6
3D chromatin structure
5
DNA methylation
4
Transcription
1
DNA accessibility
Target of assay
17
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
11
October, 2019
5
July, 2019
3
February, 2020
3
March, 2020
2
June, 2019
2
May, 2022
1
May, 2019
Available data
99
bam
bigWig
87
bed narrowPeak
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
14
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
40
Homo sapiens
Biosample type
37
tissue
3
primary cell
Organ
313
pancreas
223
kidney
217
epithelium
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
6
hg19
Lab
40
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
assay_title!
MeRIP-seq
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
tibial nerve
11
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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