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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
46
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
25
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
25
November, 2017
12
February, 2020
10
October, 2019
9
October, 2017
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
64
Homo sapiens
Biosample type
63
tissue
1
primary cell
Organ
321
pancreas
222
epithelium
221
kidney
169
heart
167
liver
105
connective tissue
81
vasculature
80
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
27
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
bed bed3+
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 22 more…
primary cell
choroid plexus epithelial cell
1
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