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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
12
total RNA-seq
8
snATAC-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
52
DNA binding
12
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
31
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
25
November, 2017
12
February, 2020
10
October, 2019
9
October, 2017
8
January, 2021
3
January, 2019
3
May, 2019
3
November, 2018
2
July, 2019
2
March, 2020
1
February, 2023
Available data
303
bam
bigWig
257
bed narrowPeak
181
bigBed narrowPeak
118
tagAlign
81
fastq
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
78
Homo sapiens
Biosample type
63
tissue
9
primary cell
6
cell line
Organ
323
pancreas
222
epithelium
221
kidney
169
heart
169
liver
113
connective tissue
81
vasculature
80
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
8
T1D
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
70
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 22 more…
primary cell
peripheral blood mononuclear cell
8
choroid plexus epithelial cell
1
cell line
GM12878
6
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