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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
ChIP-seq
42
total RNA-seq
5
pCHi-C
4
ATAC-seq
4
RRBS
4
WGBS
3
Hi-C
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
166
DNA binding
43
Transcription
8
DNA methylation
5
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
120
control
41
histone
41
histone modification
22
broad histone mark
19
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
72
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
13
February, 2020
11
October, 2019
9
October, 2017
4
July, 2019
4
March, 2020
3
February, 2021
3
May, 2019
1
December, 2018
1
February, 2023
1
November, 2018
Available data
924
bam
bigWig
644
bed narrowPeak
486
fastq
485
bigBed narrowPeak
204
tagAlign
200
tsv
110
bed broadPeak
101
bigBed broadPeak
48
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
233
Homo sapiens
Biosample type
159
tissue
69
cell line
4
primary cell
1
in vitro differentiated cells
Organ
323
pancreas
222
epithelium
221
kidney
169
heart
169
liver
113
connective tissue
81
vasculature
80
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
Genome assembly (visualization)
13
hg19
6
GRCh38
Lab
196
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
2
missing controlled_by
files.file_type!
bigWig
assay_title!
RNA microarray
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
RRBS
WGBS
Hi-C
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
1
1
3
1
1
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
right lobe of liver
3
1
1
1
+ See 24 more…
cell line
HepG2
52
9
2
1
2
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
choroid plexus epithelial cell
1
in vitro differentiated cells
hepatocyte
1
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