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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
1
whole genome sequencing assay
Assay category
19
DNA methylation
1
DNA sequencing
Date released
15
July, 2019
4
August, 2017
1
August, 2021
Available data
3374
bam
bigWig
1777
bed narrowPeak
1594
tsv
1341
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
20
Homo sapiens
Biosample type
10
primary cell
9
tissue
1
cell line
Organ
6
epithelium
4
kidney
3
liver
3
musculature of body
2
brain
2
heart
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
20
AMP
Genome assembly (visualization)
19
hg19
Lab
19
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
assay_title!
WGBS
BIOSAMPLE
ASSAY
20 results
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RRBS
whole genome sequencing assay
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
cell line
HepG2
1
See all biosamples
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