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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
217
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
Hi-C
11
RRBS
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
310
Transcription
292
DNA binding
246
DNA accessibility
11
DNA methylation
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
227
August, 2021
101
February, 2021
99
August, 2017
95
February, 2023
81
October, 2019
47
September, 2023
46
May, 2022
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2020
22
March, 2020
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
12
December, 2017
9
October, 2017
8
January, 2021
6
July, 2019
6
September, 2017
4
December, 2018
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1890
bam
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
367
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
975
Homo sapiens
Biosample type
978
tissue
414
primary cell
131
cell line
131
in vitro differentiated cells
7
stem cell
Organ
207
kidney
151
heart
128
pancreas
100
bone element
91
liver
63
brain
62
connective tissue
61
adipose tissue
61
blood vessel
61
vasculature
53
eye
46
artery
27
limb
20
lung
19
musculature of body
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
883
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
147
GRCh38
97
hg19
Lab
690
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
assay_title!
WGBS
Hi-C
organ_slims!
blood
BIOSAMPLE
ASSAY
978 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
islet of Langerhans
42
65
32
7
4
1
4
liver
63
1
20
1
1
bone element
84
coronary artery
2
35
1
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