Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
458
ChIP-seq
340
ATAC-seq
263
single cell RNA-seq
246
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
56
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
246
Transcription
Date released
93
February, 2023
59
August, 2021
26
May, 2022
24
February, 2020
16
September, 2020
14
October, 2019
7
May, 2021
4
July, 2018
2
March, 2020
May, 2020
1
May, 2023
Available data
1132
tsv
1100
bam
bigWig
243
fastq
59
txt
2
bed bed3+
Organism
246
Homo sapiens
Biosample type
135
tissue
93
primary cell
9
cell line
9
in vitro differentiated cells
Organ
73
pancreas
55
epithelium
49
kidney
30
liver
19
eye
12
brain
7
connective tissue
4
bone element
4
skeleton
3
adipose tissue
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
nerve
spinal cord
Project
147
AMP
92
HPAP
7
T1D
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
92
Klaus Kaestner, Upenn
58
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
month_released!
May, 2020
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
246 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
kidney
49
islet of Langerhans
32
liver
20
retina
3
pigmented layer of retina
2
+ See 29 more…
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
monocyte
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
Download