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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
453
ChIP-seq
326
ATAC-seq
263
single cell RNA-seq
194
total RNA-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
23
Hi-C
15
RRBS
11
WGBS
5
STARR-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
194
Transcription
Date released
59
August, 2021
54
February, 2023
26
May, 2022
25
February, 2020
14
October, 2019
7
May, 2021
4
July, 2018
2
March, 2020
2
May, 2020
1
May, 2023
Available data
1237
tsv
1206
bam
bigWig
156
fastq
59
txt
2
bed bed3+
Organism
194
Homo sapiens
Biosample type
134
tissue
42
primary cell
9
cell line
9
in vitro differentiated cells
Organ
73
pancreas
epithelium
49
kidney
30
liver
19
eye
12
brain
7
connective tissue
4
bone element
4
skeleton
3
adipose tissue
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
nerve
1
spinal cord
Project
148
AMP
39
HPAP
7
T1D
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
59
AMP-T2D consortium
49
Katalin Susztak, Upenn
39
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
epithelium
BIOSAMPLE
ASSAY
194 results
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total RNA-seq
tissue
kidney
49
islet of Langerhans
32
liver
20
retina
3
Ammon's horn
1
+ See 29 more…
primary cell
exocrine cell
39
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
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