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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
93
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
93
Transcription
Date released
93
February, 2023
59
August, 2021
26
May, 2022
24
February, 2020
16
September, 2020
14
October, 2019
7
May, 2021
4
July, 2018
2
March, 2020
2
May, 2020
1
May, 2023
Available data
76
fastq
4
tsv
4
txt
Organism
93
Homo sapiens
Biosample type
76
primary cell
13
tissue
4
in vitro differentiated cells
Organ
42
pancreas
39
epithelium
4
bone element
4
connective tissue
4
eye
4
skeleton
Project
76
HPAP
12
AMP
5
T1D
Lab
76
Klaus Kaestner, Upenn
12
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
93 results
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total RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
5
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
ilium
1
+ See 2 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
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