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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
30
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
30
Transcription
2
DNA accessibility
Date released
20
May, 2022
9
August, 2021
1
February, 2020
1
February, 2021
1
October, 2019
Available data
bigWig
169
tsv
162
bam
23
bed narrowPeak
6
fastq
1
bed bed3
1
bigBed narrowPeak
Organism
32
Homo sapiens
Biosample type
21
tissue
10
cell line
1
primary cell
Organ
184
pancreas
124
epithelium
124
kidney
47
eye
46
blood vessel
46
heart
46
vasculature
45
artery
32
liver
23
connective tissue
16
bone element
16
skeleton
14
brain
9
limb
5
adipose tissue
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spinal cord
Project
32
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
20
Karen Mohlke, UNC
9
Bing Ren, UCSD
3
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bigWig
BIOSAMPLE
ASSAY
32 results
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total RNA-seq
ATAC-seq
tissue
liver
20
right lobe of liver
1
cell line
HepG2
9
1
primary cell
Liver fetal (hepatocyte)
1
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