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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
73
total RNA-seq
57
ChIP-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
73
Transcription
8
3D chromatin structure
Date released
42
February, 2023
16
September, 2020
6
May, 2022
4
July, 2018
3
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
1
February, 2020
1
March, 2019
1
May, 2021
Available data
336
bam
332
tsv
bigWig
184
fastq
7
bedpe bed3+
7
hic
6
txt
3
cool
1
bed bed3+
1
bedpe
1
hdf5
Organism
81
Homo sapiens
Biosample type
56
primary cell
24
tissue
1
cell line
Organ
81
pancreas
61
epithelium
50
kidney
33
liver
19
eye
12
brain
8
musculature of body
7
connective tissue
7
limb
6
blood vessel
6
heart
6
vasculature
4
bone element
4
skeleton
3
adipose tissue
2
artery
2
vein
1
nerve
1
spinal cord
Project
56
HPAP
18
AMP
7
T1D
Genome assembly (visualization)
7
hg19
Lab
56
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
10
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
Hi-C
primary cell
pancreatic alpha cell
42
1
pancreatic beta cell
11
1
pancreatic acinar cell
1
tissue
islet of Langerhans
18
3
pancreas
1
1
body of pancreas
1
cell line
EndoC_BH1
1
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