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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
35
DNA accessibility
23
DNA binding
9
Transcription
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
1
July, 2019
1
March, 2020
Available data
36
bed narrowPeak
26
bam
10
tsv
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
69
Homo sapiens
Biosample type
62
tissue
5
primary cell
2
cell line
Organ
272
pancreas
218
kidney
197
epithelium
161
liver
156
heart
92
connective tissue
89
bone element
69
blood vessel
69
vasculature
63
adipose tissue
59
brain
48
artery
27
eye
25
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
43
GRCh38
hg19
Lab
69
AMP-T2D consortium
files.file_type!
bigWig
assembly!
hg19
BIOSAMPLE
ASSAY
69 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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primary cell
endothelial cell of umbilical vein
5
cell line
smooth muscle cell of the coronary artery
2
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