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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
Hi-C
Assay category
511
Transcription
469
DNA binding
447
DNA accessibility
78
DNA methylation
24
3D chromatin structure
1
DNA sequencing
Date released
8
March, 2020
4
July, 2019
3
August, 2021
3
October, 2022
2
October, 2019
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
18
hic
15
bedpe bed3+
5
bed bed3+
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
24
Homo sapiens
Biosample type
16
tissue
6
primary cell
2
cell line
Organ
7
pancreas
6
musculature of body
5
epithelium
4
limb
3
blood vessel
3
heart
3
liver
3
vasculature
2
vein
1
kidney
Project
20
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
16
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
files.file_type!
bigWig
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
24 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
2
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