Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
26
DNA accessibility
11
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
16
August, 2021
16
May, 2021
10
February, 2021
6
February, 2023
6
November, 2020
2
March, 2020
2
March, 2023
2
November, 2019
1
December, 2018
1
May, 2020
1
October, 2022
Available data
113
tsv
112
bam
bigWig
11
bed narrowPeak
7
fastq
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
1
hdf5
1
txt
1
vcf
Organism
59
Homo sapiens
Biosample type
512
tissue
438
primary cell
63
cell line
52
in vitro differentiated cells
6
stem cell
Organ
27
epithelium
27
pancreas
17
liver
8
artery
8
blood vessel
8
heart
8
vasculature
kidney
1
mammary gland
Project
56
AMP
5
T1D
2
community
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
36
AMP-T2D consortium
14
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
27
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bigWig
organ_slims!
kidney
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
63 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
STARR-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
17
6
3
1
2
2
1
HepG2
1
9
2
2
2
1
smooth muscle cell of the coronary artery
8
EndoC-BH1
1
1
MCF-7
1
MIN6
1
Synthesized DNA
1
fibroblast cell line
1
See all biosamples
Download