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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
5
ChIP-seq
4
Hi-C
2
Capture-C
2
pCHi-C
Assay category
30
DNA accessibility
5
DNA binding
4
3D chromatin structure
Target of assay
5
control
Date released
12
August, 2021
9
February, 2023
5
November, 2019
4
December, 2017
4
February, 2021
4
March, 2020
4
October, 2019
1
August, 2017
Available data
264
bam
bigWig
131
bed narrowPeak
127
tsv
118
fastq
25
bed bed3+
17
bigBed narrowPeak
17
tagAlign
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
43
Homo sapiens
Biosample type
108
tissue
43
in vitro differentiated cells
32
primary cell
13
cell line
1
stem cell
Organ
16
connective tissue
1
embryo
Project
43
AMP
Genome assembly (visualization)
43
hg19
22
GRCh38
Lab
41
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
15
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
43 results
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ATAC-seq
ChIP-seq
Hi-C
Capture-C
pCHi-C
in vitro differentiated cells
neural progenitor cell
10
adipocyte
5
1
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
2
1
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