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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ATAC-seq
4
Hi-C
3
pCHi-C
2
ChIP-seq
2
single cell RNA-seq
2
total RNA-seq
Assay category
9
DNA accessibility
4
3D chromatin structure
4
Transcription
2
DNA binding
Target of assay
2
control
Date released
5
March, 2020
5
November, 2019
4
February, 2023
4
October, 2019
2
December, 2017
2
December, 2019
Available data
101
bam
bigWig
90
tsv
13
bed narrowPeak
6
bedpe bed3+
4
fastq
4
hic
3
tagAlign
2
bed bed3+
2
ibed
1
bed bedgraph
1
txt
Organism
22
Homo sapiens
Biosample type
88
tissue
34
cell line
22
in vitro differentiated cells
16
primary cell
1
stem cell
Organ
4
connective tissue
2
embryo
2
epithelium
Project
22
AMP
Genome assembly (visualization)
15
hg19
7
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
2
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
22 results
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ATAC-seq
Hi-C
pCHi-C
ChIP-seq
single cell RNA-seq
total RNA-seq
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
2
Hepatic endoderm
2
cardiac precursors (cardiac muscle cell)
1
1
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