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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
13
ATAC-seq
4
total RNA-seq
2
Capture-C
1
pCHi-C
Assay category
20
DNA binding
13
DNA accessibility
4
Transcription
Target of assay
12
histone
12
histone modification
8
broad histone mark
8
control
4
narrow histone mark
Date released
20
August, 2017
13
February, 2023
4
February, 2021
2
August, 2021
1
August, 2018
Available data
59
bam
bigWig
55
fastq
45
bed narrowPeak
14
tagAlign
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
40
Homo sapiens
Biosample type
66
tissue
40
in vitro differentiated cells
7
primary cell
1
stem cell
Organ
40
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
40
AMP
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
38
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
20
5
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
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