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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
30
ATAC-seq
9
total RNA-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
60
DNA binding
30
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
15
control
14
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
20
August, 2021
14
August, 2017
13
February, 2023
6
March, 2020
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
Available data
291
bam
bigWig
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
111
Homo sapiens
Biosample type
907
tissue
301
primary cell
111
in vitro differentiated cells
85
cell line
6
stem cell
Organ
33
connective tissue
1
epithelium
1
pancreas
Project
111
AMP
Genome assembly (visualization)
38
hg19
17
GRCh38
Lab
67
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
20
inconsistent ontology term
2
audit script error
files.file_type!
bigWig
fastq
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
5
1
adipocyte
14
5
1
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
2
cardiac precursors (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
preadipocyte
1
1
osteoblast
1
pancreatic PP cell
1
See all biosamples
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