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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
23
ChIP-seq
4
Hi-C
4
pCHi-C
4
total RNA-seq
2
single cell RNA-seq
Assay category
30
DNA accessibility
23
DNA binding
6
Transcription
4
3D chromatin structure
Target of assay
13
histone
13
histone modification
10
control
9
broad histone mark
4
narrow histone mark
Date released
18
August, 2021
14
August, 2017
13
February, 2023
6
March, 2020
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
1
May, 2021
Available data
291
bam
bigWig
fastq
131
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
67
Homo sapiens
Biosample type
641
tissue
121
primary cell
67
in vitro differentiated cells
52
cell line
4
stem cell
Organ
31
connective tissue
1
epithelium
1
pancreas
Project
67
AMP
Genome assembly (visualization)
36
hg19
17
GRCh38
Lab
67
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
20
inconsistent ontology term
2
audit script error
files.file_type!
bigWig
fastq
BIOSAMPLE
ASSAY
67 results
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ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte
5
14
1
neural progenitor cell
10
8
cardiomyocytes (cardiac muscle cell)
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
2
cardiac precursors (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
preadipocyte
1
1
embryonic stem cell
1
pancreatic PP cell
1
See all biosamples
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