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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ATAC-seq
105
ChIP-seq
56
snATAC-seq
47
WGBS
23
pCHi-C
10
RRBS
9
Hi-C
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
206
DNA accessibility
Transcription
105
DNA binding
58
DNA methylation
9
3D chromatin structure
1
DNA sequencing
Target of assay
95
control
8
histone
8
histone modification
5
broad histone mark
5
transcription factor
3
narrow histone mark
3
nucleotide modification
2
RNA binding protein
1
recombinant protein
Date released
101
May, 2022
56
May, 2020
50
May, 2021
47
February, 2021
47
November, 2017
21
October, 2019
18
February, 2023
14
August, 2021
13
August, 2017
9
July, 2019
8
January, 2021
8
June, 2019
7
November, 2020
5
March, 2020
4
November, 2018
4
November, 2019
4
October, 2022
3
January, 2019
1
December, 2018
1
March, 2023
1
May, 2019
Available data
835
bam
bigWig
699
bed narrowPeak
583
fastq
464
bigBed narrowPeak
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
101
zippedFastqFolder
38
bed bed3+
24
tsv
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
1
txt
1
vcf
Organism
420
Homo sapiens
Biosample type
695
tissue
293
primary cell
129
cell line
124
in vitro differentiated cells
5
stem cell
Organ
151
epithelium
137
pancreas
63
liver
18
vasculature
17
blood vessel
15
kidney
14
blood
14
bodily fluid
13
heart
10
artery
7
connective tissue
7
vein
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
1
mammary gland
Project
255
AMP
137
HPAP
29
T1D
1
ITG
Genome assembly (visualization)
45
hg19
27
GRCh38
Lab
238
AMP-T2D consortium
137
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
Audit category:
50
inconsistent ontology term
31
audit script error
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
assay_slims!
Transcription
BIOSAMPLE
ASSAY
422 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
whole genome sequencing assay
primary cell
pancreatic alpha cell
22
6
31
1
Langerhans cell
48
pancreatic beta cell
13
6
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
+ See 39 more…
cell line
HepG2
1
52
2
2
2
1
EndoC_BH1
17
2
1
6
3
2
2
1
smooth muscle cell of the coronary artery
8
2
Panc1
7
GM12878
6
+ See 10 more…
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