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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
339
ATAC-seq
324
ChIP-seq
261
single cell RNA-seq
231
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
42
pCHi-C
22
Hi-C
21
RRBS
4
MeRIP-seq
3
DNase-seq
3
snDrop-seq
1
DNAme array
Assay category
492
Transcription
426
DNA accessibility
324
DNA binding
80
DNA methylation
22
3D chromatin structure
Target of assay
212
control
113
histone
113
histone modification
59
narrow histone mark
54
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
230
August, 2021
183
February, 2023
180
May, 2022
147
February, 2021
119
August, 2017
93
October, 2019
80
May, 2020
56
September, 2020
47
September, 2023
37
May, 2021
30
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
July, 2019
23
May, 2019
21
November, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
12
December, 2017
9
October, 2017
8
June, 2019
6
September, 2017
5
March, 2019
5
November, 2020
4
December, 2018
4
July, 2018
4
November, 2018
3
December, 2019
3
October, 2022
1
August, 2022
1
January, 2019
1
March, 2023
1
September, 2018
Available data
2516
bam
bigWig
1346
tsv
1279
bed narrowPeak
786
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
1477
Homo sapiens
Biosample type
1005
tissue
475
primary cell
140
cell line
135
in vitro differentiated cells
7
stem cell
Organ
286
pancreas
216
kidney
190
epithelium
159
heart
101
bone element
99
liver
73
connective tissue
71
vasculature
70
blood vessel
65
adipose tissue
64
brain
55
eye
46
artery
31
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
9
spleen
8
blood
8
bodily fluid
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1046
AMP
314
HPAP
53
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
164
GRCh38
140
hg19
Lab
850
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
76
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
Audit category:
104
inconsistent ontology term
40
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
1480 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
DNase-seq
snDrop-seq
DNAme array
tissue
kidney
75
7
64
49
6
1
1
islet of Langerhans
65
42
32
7
4
3
1
4
liver
63
1
20
3
1
1
1
bone element
84
coronary artery
35
2
1
+ See 93 more…
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
6
42
31
1
pancreatic beta cell
13
6
11
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
+ See 41 more…
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