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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
87
single cell RNA-seq
47
WGBS
32
ChIP-seq
17
pCHi-C
10
RRBS
6
Hi-C
1
DNAme array
Assay category
182
Transcription
DNA accessibility
58
DNA methylation
32
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
76
February, 2023
74
May, 2022
56
September, 2020
22
May, 2021
19
February, 2021
13
August, 2017
9
July, 2019
8
June, 2019
7
October, 2019
3
October, 2022
2
May, 2020
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
bigWig
495
bam
349
fastq
258
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
295
Homo sapiens
Biosample type
757
tissue
295
primary cell
110
cell line
105
in vitro differentiated cells
5
stem cell
Organ
133
epithelium
115
pancreas
8
vasculature
7
blood vessel
7
vein
6
connective tissue
6
kidney
3
heart
3
musculature of body
2
eye
2
liver
1
bone element
1
bone marrow
1
brain
Project
227
HPAP
51
AMP
16
T1D
1
ITG
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
227
Klaus Kaestner, Upenn
51
AMP-T2D consortium
16
Kyle Gaulton, UCSD
1
ITG
Audit category:
8
inconsistent ontology term
4
audit script error
files.file_type!
bigWig
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
295 results
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total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
6
1
exocrine cell
39
pancreatic beta cell
11
16
6
1
endothelial cell of umbilical vein
5
2
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