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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
ChIP-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
180
DNA accessibility
58
DNA methylation
29
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
33
May, 2021
13
August, 2017
10
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
506
bam
bigWig
369
fastq
270
tsv
191
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
472
Homo sapiens
Biosample type
949
tissue
472
primary cell
140
cell line
120
in vitro differentiated cells
7
stem cell
Organ
174
epithelium
154
pancreas
8
blood
8
bodily fluid
8
kidney
7
connective tissue
7
vasculature
6
blood vessel
6
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
314
HPAP
133
AMP
24
T1D
1
ITG
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
314
Klaus Kaestner, Upenn
133
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
16
inconsistent ontology term
files.file_type!
bigWig
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
472 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
1
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