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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ATAC-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
ChIP-seq
19
total RNA-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
Assay category
168
DNA accessibility
106
Transcription
58
DNA methylation
29
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
narrow histone mark
Date released
134
May, 2022
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
33
May, 2021
13
August, 2017
10
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
506
bam
bigWig
293
fastq
258
tsv
191
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
384
Homo sapiens
Biosample type
854
tissue
384
primary cell
134
cell line
107
in vitro differentiated cells
7
stem cell
Organ
137
epithelium
117
pancreas
8
blood
8
bodily fluid
8
kidney
7
connective tissue
7
vasculature
6
blood vessel
6
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
238
HPAP
121
AMP
24
T1D
1
ITG
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
238
Klaus Kaestner, Upenn
121
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
10
inconsistent ontology term
files.file_type!
bigWig
target.investigated_as!
narrow histone mark
month_released!
February, 2023
BIOSAMPLE
ASSAY
384 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
total RNA-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
31
6
15
1
pancreatic beta cell
13
16
6
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
1
CD4-positive, alpha-beta memory T cell
22
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