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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
ChIP-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
179
DNA accessibility
58
DNA methylation
29
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
33
May, 2021
13
August, 2017
10
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
November, 2020
1
September, 2018
Available data
500
bam
bigWig
369
fastq
266
tsv
189
bed narrowPeak
153
zippedFastqFolder
82
bigBed narrowPeak
53
tagAlign
40
bed broadPeak
40
bigBed broadPeak
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
471
Homo sapiens
Biosample type
945
tissue
471
primary cell
134
cell line
120
in vitro differentiated cells
7
stem cell
Organ
174
epithelium
154
pancreas
8
blood
8
bodily fluid
8
kidney
7
vasculature
6
blood vessel
6
connective tissue
6
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
314
HPAP
132
AMP
24
T1D
1
ITG
Genome assembly (visualization)
31
hg19
16
GRCh38
Lab
314
Klaus Kaestner, Upenn
132
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
16
inconsistent ontology term
files.file_type!
bigWig
target.investigated_as!
narrow histone mark
month_released!
November, 2020
BIOSAMPLE
ASSAY
471 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
1
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