Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
24
ChIP-seq
17
pCHi-C
10
RRBS
5
Hi-C
1
DNAme array
Assay category
182
Transcription
176
DNA accessibility
58
DNA methylation
24
DNA binding
5
3D chromatin structure
Target of assay
22
control
4
histone
4
histone modification
2
broad histone mark
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
33
May, 2021
13
August, 2017
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
484
bam
369
fastq
268
tsv
178
bed narrowPeak
153
zippedFastqFolder
75
bigBed narrowPeak
53
tagAlign
37
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
462
Homo sapiens
Biosample type
890
tissue
462
primary cell
130
cell line
116
in vitro differentiated cells
7
stem cell
Organ
165
epithelium
154
pancreas
8
blood
8
bodily fluid
7
connective tissue
5
kidney
3
heart
3
musculature of body
2
eye
2
liver
2
vasculature
1
blood vessel
1
bone element
1
bone marrow
1
brain
1
vein
Project
314
HPAP
123
AMP
24
T1D
1
ITG
Genome assembly (visualization)
29
hg19
15
GRCh38
Lab
314
Klaus Kaestner, Upenn
123
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
14
inconsistent ontology term
files.file_type!
bigWig
target.investigated_as!
narrow histone mark
month_released!
October, 2019
BIOSAMPLE
ASSAY
462 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
1
+ See 37 more…
See all biosamples
Download