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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
12
ChIP-seq
6
WGBS
1
RRBS
Assay category
128
Transcription
27
DNA accessibility
12
DNA binding
7
DNA methylation
Target of assay
12
control
Date released
76
February, 2023
45
February, 2021
38
September, 2020
13
August, 2017
1
November, 2018
1
September, 2018
Available data
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
174
Homo sapiens
Biosample type
174
primary cell
98
tissue
55
cell line
24
in vitro differentiated cells
1
stem cell
Organ
71
epithelium
71
pancreas
Project
159
HPAP
15
AMP
Genome assembly (visualization)
1
hg19
Lab
159
Klaus Kaestner, Upenn
15
AMP-T2D consortium
Audit category:
27
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
174 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
WGBS
RRBS
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
6
6
exocrine cell
39
pancreatic beta cell
11
6
pancreatic cell
2
skeletal muscle myoblast
1
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