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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
310
Transcription
DNA binding
246
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
229
August, 2021
101
February, 2021
95
February, 2023
47
September, 2023
46
May, 2022
32
October, 2019
29
March, 2020
25
February, 2020
21
November, 2019
19
April, 2020
15
May, 2023
14
July, 2019
13
August, 2017
8
January, 2021
5
March, 2019
4
July, 2018
4
November, 2020
3
December, 2019
2
May, 2021
1
August, 2022
Available data
1185
bam
bigWig
1076
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
711
Homo sapiens
Biosample type
713
tissue
443
primary cell
67
cell line
52
in vitro differentiated cells
6
stem cell
Organ
201
kidney
140
heart
100
bone element
97
pancreas
51
eye
47
blood vessel
47
vasculature
39
artery
30
liver
20
lung
17
brain
16
skeleton
15
epithelium
15
musculature of body
13
limb
11
adipose tissue
11
connective tissue
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
618
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
141
GRCh38
103
hg19
Lab
422
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
files.file_type!
bigWig
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
713 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
65
32
7
4
3
1
4
bone element
84
coronary artery
35
1
liver
1
20
1
1
1
3
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