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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
310
Transcription
292
DNA binding
29
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
106
August, 2017
93
February, 2021
69
October, 2019
47
September, 2023
29
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
19
April, 2020
16
February, 2023
15
April, 2019
14
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
4
December, 2018
4
July, 2018
4
May, 2023
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
March, 2019
1
November, 2019
Available data
1843
bam
bigWig
1075
tsv
736
bed narrowPeak
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
785
Homo sapiens
Biosample type
788
tissue
353
primary cell
114
cell line
105
in vitro differentiated cells
7
stem cell
Organ
133
kidney
121
heart
96
liver
88
bone element
77
pancreas
64
connective tissue
63
adipose tissue
61
brain
28
blood vessel
28
vasculature
25
eye
25
limb
25
musculature of body
20
lung
12
nerve
11
artery
9
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
704
AMP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
27
hg19
7
GRCh38
Lab
605
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
788 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
6
1
1
islet of Langerhans
42
32
7
4
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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