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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ChIP-seq
247
ATAC-seq
176
single cell RNA-seq
145
total RNA-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
20
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
DNase-seq
Assay category
375
DNA binding
321
Transcription
276
DNA accessibility
22
DNA methylation
20
3D chromatin structure
Target of assay
224
control
140
histone
140
histone modification
71
narrow histone mark
69
broad histone mark
13
transcription factor
6
RNA binding protein
2
nucleotide modification
Date released
249
August, 2021
126
August, 2017
108
February, 2023
105
February, 2021
86
October, 2019
47
September, 2023
46
May, 2022
45
May, 2021
35
March, 2020
29
October, 2018
26
November, 2019
25
February, 2020
25
November, 2017
23
May, 2020
22
May, 2019
21
December, 2017
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
9
October, 2017
8
February, 2018
8
January, 2021
6
September, 2017
5
December, 2019
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
November, 2018
1
August, 2018
1
August, 2022
1
January, 2019
Available data
2198
bam
bigWig
1207
tsv
1076
bed narrowPeak
578
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1137
Homo sapiens
Biosample type
1005
tissue
475
primary cell
140
cell line
135
in vitro differentiated cells
7
stem cell
Organ
208
kidney
156
heart
133
pancreas
106
connective tissue
100
bone element
97
liver
66
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
25
musculature of body
20
lung
19
epithelium
16
skeleton
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1045
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
169
GRCh38
151
hg19
Lab
805
AMP-T2D consortium
142
Katalin Susztak, Upenn
94
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Maike Sander, UCSD
Audit category:
110
inconsistent ontology term
11
audit script error
Audit category:
2
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
1140 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
Capture-C
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
65
32
4
7
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
coronary artery
2
35
1
+ See 93 more…
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
20
5
1
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
+ See 16 more…
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