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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
28
ChIP-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
28
DNA binding
6
DNA methylation
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
7
control
1
transcription factor
Date released
28
August, 2017
20
May, 2022
17
August, 2021
2
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
75
Homo sapiens
Biosample type
53
tissue
21
cell line
1
primary cell
Organ
235
pancreas
210
kidney
193
epithelium
141
heart
93
bone element
83
connective tissue
75
liver
54
eye
49
vasculature
48
blood vessel
46
adipose tissue
39
artery
39
brain
25
musculature of body
20
lung
8
blood
8
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
5
hg19
Lab
38
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
files.file_type!
bigWig
bam
BIOSAMPLE
ASSAY
75 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
23
3
1
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
5
2
2
2
1
primary cell
hepatocyte
1
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