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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
17
ATAC-seq
14
total RNA-seq
4
Hi-C
4
pCHi-C
2
DNase-seq
Assay category
66
DNA binding
19
DNA accessibility
14
Transcription
4
3D chromatin structure
Target of assay
39
control
27
histone
27
histone modification
24
narrow histone mark
3
broad histone mark
Date released
272
August, 2021
192
February, 2023
180
May, 2022
163
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
250
bam
bigWig
189
bed narrowPeak
70
bigBed narrowPeak
49
tagAlign
16
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
107
Homo sapiens
Biosample type
82
tissue
11
primary cell
10
cell line
4
in vitro differentiated cells
Organ
21
eye
17
limb
11
blood vessel
11
nerve
11
vasculature
10
brain
10
epithelium
10
pancreas
8
kidney
6
vein
5
artery
4
gonad
4
ovary
1
connective tissue
1
heart
1
liver
1
lymph node
1
pituitary gland
1
skin of body
Project
107
AMP
Genome assembly (visualization)
10
hg19
6
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
bed bed3
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
DNase-seq
tissue
islet of Langerhans
21
13
14
4
tibial nerve
11
tibial artery
5
kidney
2
central medial thalamic nucleus
1
+ See 11 more…
primary cell
endothelial cell of umbilical vein
5
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
epithelial cell of proximal tubule
1
kidney glomerular epithelial cell
1
+ See 1 more…
cell line
Panc1
7
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
cardiomyocytes (cardiac muscle cell)
1
1
See all biosamples
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