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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
291
ChIP-seq
174
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
44
ATAC-seq
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
310
Transcription
291
DNA binding
73
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
105
histone
105
histone modification
56
narrow histone mark
49
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
165
August, 2021
106
August, 2017
93
February, 2021
82
October, 2019
47
September, 2023
32
February, 2023
29
March, 2020
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
23
May, 2020
22
May, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
1907
bam
bigWig
1076
tsv
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
828
Homo sapiens
Biosample type
831
tissue
459
primary cell
130
cell line
118
in vitro differentiated cells
7
stem cell
Organ
144
kidney
121
heart
96
liver
95
pancreas
92
bone element
64
connective tissue
63
adipose tissue
62
brain
28
blood vessel
28
vasculature
26
eye
25
limb
25
musculature of body
20
lung
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
736
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
34
hg19
19
GRCh38
Lab
622
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
bed narrowPeak
BIOSAMPLE
ASSAY
831 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
49
11
6
1
1
islet of Langerhans
42
32
28
7
4
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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