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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
93
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
102
DNA accessibility
94
Transcription
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
March, 2019
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
76
fastq
65
bed narrowPeak
16
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
bigWig
Organism
201
Homo sapiens
Biosample type
95
tissue
88
primary cell
13
in vitro differentiated cells
6
cell line
Organ
56
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
103
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
42
hg19
35
GRCh38
Lab
103
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
files.file_type!
bigWig
bedpe
BIOSAMPLE
ASSAY
202 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
cell line
EndoC_BH1
3
2
1
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