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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ATAC-seq
57
ChIP-seq
13
total RNA-seq
10
MeRIP-seq
4
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
62
DNA accessibility
57
DNA binding
13
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
53
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
29
August, 2017
24
May, 2022
24
November, 2019
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
6
September, 2017
4
August, 2021
4
July, 2018
4
March, 2019
2
July, 2019
2
March, 2020
1
August, 2022
1
February, 2020
1
February, 2023
1
May, 2019
Available data
683
bam
bigWig
409
tsv
402
fastq
210
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
bedpe
1
hdf5
Organism
150
Homo sapiens
Biosample type
103
tissue
36
cell line
12
primary cell
1
in vitro differentiated cells
Organ
176
kidney
169
heart
169
liver
152
pancreas
113
connective tissue
100
bone element
81
epithelium
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
16
skeleton
12
nerve
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
152
AMP
142
HPAP
28
T1D
Genome assembly (visualization)
47
hg19
24
GRCh38
Lab
111
AMP-T2D consortium
25
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
bedpe
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
snATAC-seq
tissue
islet of Langerhans
44
21
11
4
2
1
1
body of pancreas
9
1
pancreas
3
1
1
1
1
endocrine pancreas
2
cell line
EndoC_BH1
17
2
6
1
2
1
Panc1
7
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
in vitro differentiated cells
pancreatic PP cell
1
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