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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
59
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
ChIP-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
80
DNA accessibility
3
3D chromatin structure
1
DNA binding
1
DNA sequencing
Target of assay
control
1
broad histone mark
1
histone
1
histone modification
Date released
260
August, 2021
202
February, 2023
180
May, 2022
161
February, 2021
90
May, 2021
86
August, 2017
68
October, 2019
58
May, 2020
56
September, 2020
47
September, 2023
44
March, 2020
28
November, 2019
25
February, 2020
19
April, 2020
17
November, 2017
16
January, 2021
15
May, 2023
8
July, 2019
6
November, 2020
6
October, 2017
5
December, 2019
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
2
November, 2018
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2017
1
December, 2018
1
September, 2018
Available data
123
tsv
106
bed narrowPeak
64
xls
57
txt
bigWig
41
bam
16
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
259
Homo sapiens
Biosample type
229
tissue
18
cell line
13
in vitro differentiated cells
Organ
130
kidney
92
heart
13
liver
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
2
artery
2
epithelium
1
adipose tissue
Project
260
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
128
Katalin Susztak, Upenn
112
AMP-T2D consortium
18
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
bigBed bedMethyl
target.investigated_as!
control
BIOSAMPLE
ASSAY
260 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
ChIP-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
1
adipocyte
1
osteoblast
1
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