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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
39
ATAC-seq
6
total RNA-seq
Assay category
43
DNA binding
39
DNA accessibility
6
Transcription
Target of assay
42
control
1
broad histone mark
1
histone
1
histone modification
Date released
24
May, 2022
22
November, 2019
15
August, 2017
11
October, 2018
7
October, 2019
6
September, 2017
1
March, 2019
1
May, 2019
1
May, 2021
Available data
689
bam
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
87
Homo sapiens
Biosample type
65
tissue
12
primary cell
10
cell line
1
in vitro differentiated cells
Organ
94
liver
88
pancreas
32
blood vessel
32
vasculature
31
connective tissue
30
epithelium
28
heart
25
brain
23
limb
20
adipose tissue
17
artery
13
kidney
11
nerve
8
bone element
8
embryo
8
skeleton
8
spleen
6
blood
6
bodily fluid
5
vein
3
musculature of body
1
eye
Project
88
AMP
Genome assembly (visualization)
40
hg19
22
GRCh38
Lab
63
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
tissue
islet of Langerhans
7
38
6
body of pancreas
9
pancreas
3
endocrine pancreas
2
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
cell line
Panc1
7
EndoC_BH1
2
1
in vitro differentiated cells
pancreatic PP cell
1
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