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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
47
WGBS
39
ATAC-seq
16
pCHi-C
4
Hi-C
Assay category
177
Transcription
95
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
16
May, 2021
8
January, 2021
3
October, 2022
1
March, 2023
Available data
bigWig
180
bam
169
fastq
153
zippedFastqFolder
114
bed narrowPeak
102
tsv
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
339
Homo sapiens
Biosample type
339
primary cell
291
tissue
44
in vitro differentiated cells
33
cell line
2
stem cell
Organ
142
epithelium
142
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
314
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
314
Klaus Kaestner, Upenn
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
339 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
pCHi-C
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
peripheral blood mononuclear cell
8
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